1 Take home massage

  • Peptide Sequences Identified in total: 35921

  • Avearge ms/ms identification rate(%): 20.9

  • Average mass deviation(ppm): 0.57997

2 MSMS id rate by raw file

if(summary_file_summary$set_experiment){ # Peptide sequence id by Experiment}

3 peptide sequence id by raw file

The result might look the same if the experimtal design is set to leave each rawfile as an experiment

4 Average performance

check the averaged performance from all raw files: